PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS60349.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family TALE
Protein Properties Length: 294aa    MW: 33207.6 Da    PI: 6.4385
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS60349.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.78.5e-082432762154
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 k +yp++e++ +L +++gL+ +q+ +WF N+R +
  EPS60349.1 243 KWPYPTEEDKVKLVEQTGLQLKQINNWFINQRKR 276
                 469*****************************87 PP
2ELK25.53.1e-09197218122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELK +L++++++++ ++++E++
  EPS60349.1 197 ELKIELKQGFKSRIEDVREEIL 218
                 9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.5E-173074IPR005540KNOX1
PfamPF037902.5E-163273IPR005540KNOX1
SMARTSM012562.1E-2585140IPR005541KNOX2
PfamPF037914.0E-1888139IPR005541KNOX2
PROSITE profilePS512139.132197217IPR005539ELK domain
PROSITE profilePS5007111.807217280IPR001356Homeobox domain
SMARTSM003892.1E-10219284IPR001356Homeobox domain
SuperFamilySSF466891.54E-16219285IPR009057Homeodomain-like
CDDcd000862.90E-11220281No hitNo description
Gene3DG3DSA:1.10.10.607.7E-25224283IPR009057Homeodomain-like
PfamPF059205.7E-18237276IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MQEQQQGLSM LGSAGVGAGV SDVSSMEIHH RVKAEIAVHP LCEQLLAAHV ACLRVATPID  60
QLPLIDAQLA QSHQILRCYA QNASDSLSPH EKQELDNFLA QYLLVLCSFR EQLQQHVRVH  120
AVEAVIACRE IEQNLQSLTG TSLGEGTGAT MSDDEEEMNM DFSFDHSGGG EGGDLMGFGP  180
LLPTETERSL MERVRQELKI ELKQGFKSRI EDVREEILRK RRAGKLPGDT TTVLKNWWQE  240
HSKWPYPTEE DKVKLVEQTG LQLKQINNWF INQRKRNWHS NSQSSTSLKS KRKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1273293RKRNWHSNSQSSTSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072032.11e-179homeobox protein HD1
SwissprotQ9FPQ81e-156KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLS8C1230.0S8C123_9LAMI; Uncharacterized protein
STRINGXP_008238758.11e-168(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67732329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-131KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]