PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS60387.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

BES1

Protein Properties

Length: 617aa MW: 68503.5 Da PI: 6.8247

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS60387.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	132.5	4.6e-41	11	142	2	130
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpleeaeaagssasaspesslqss 97 g +r ++++E+E++k+RER+RRai+aki+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++ +g+kp a++++ s++ s+ + s EPS60387.1 11 GVRRCRPQEEKERTKLRERQRRAITAKILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsrsQGTKPIAGAATVVVSSTLSQLPAESGS 109 6789999*************************************************************9778888888667777777777776666678 PP DUF822 98 lkssalaspvesysaspksssfpspssldsisl 130 ++s + + y+++ +++ s++ + +s+ EPS60387.1 110 PVSLGGGGISPVYRNTVDYNATHSKTPFVPTSS 142 888888888888888888888877776655544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	4.6E-37	13	122	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	1.23E-155	185	616	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	2.0E-173	189	616	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	9.8E-90	194	608	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.5E-56	226	240	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.5E-56	247	265	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.5E-56	269	290	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.5E-56	362	384	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.5E-56	435	454	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.5E-56	469	485	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.5E-56	486	497	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.5E-56	540	562	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 617 aa Download sequence Send to blast
FQDQPIPQVG GVRRCRPQEE KERTKLRERQ RRAITAKILA GLRRHGNYNL RVRADINDVI 60 AALAREAGWV VLPDGTTFPS RSQGTKPIAG AATVVVSSTL SQLPAESGSP VSLGGGGISP 120 VYRNTVDYNA THSKTPFVPT SSSQASGMMG DGAELPNDSL LGGSVDTVDD KQVVDMPAKL 180 LERDFSGTPF VPVFVMLPVR AVVNKKCELA DPDGLVRQLS ILRSMNVDGI VVDCWWGIVE 240 AHAPHDYNWN GYKMLFQIVR EMKMKIQAVM SFHECGTNVG DDAFVPLPHW VAEIGQRNPD 300 IFFTDRAGRR NPECLSWGVD KERVLGGRTA VEVYFDYMRS FRIEFHDYFE NGIISMVVIG 360 LGPRGELRYP SNPVKHGWRF PGIGEFQCYD RYLLKSLQRA AETRGHSFWG RGPENGGSYN 420 SAPHETGFFC DGGDYDGHYG RFFLGWYSGV LLDHADRILS LARLVFGETR IVAKLPGIHW 480 WYKTASHAAE LTAGYNNSCN RDGYGAAMAV LKKHGTSALL FPNGEMDFSE EESLADPDGL 540 AWQVTNCGWD SEVEMVLESS LPSNGGGYGY LVEKAKPLGH PDGKHFSSFT FLRLNPLVIM 600 ERHNLNEFES FVRKMHG

Sequence ? help Back to Top

Protein Sequence Length: 617 aa Download sequence Send to blast

FQDQPIPQVG GVRRCRPQEE KERTKLRERQ RRAITAKILA GLRRHGNYNL RVRADINDVI  60
AALAREAGWV VLPDGTTFPS RSQGTKPIAG AATVVVSSTL SQLPAESGSP VSLGGGGISP  120
VYRNTVDYNA THSKTPFVPT SSSQASGMMG DGAELPNDSL LGGSVDTVDD KQVVDMPAKL  180
LERDFSGTPF VPVFVMLPVR AVVNKKCELA DPDGLVRQLS ILRSMNVDGI VVDCWWGIVE  240
AHAPHDYNWN GYKMLFQIVR EMKMKIQAVM SFHECGTNVG DDAFVPLPHW VAEIGQRNPD  300
IFFTDRAGRR NPECLSWGVD KERVLGGRTA VEVYFDYMRS FRIEFHDYFE NGIISMVVIG  360
LGPRGELRYP SNPVKHGWRF PGIGEFQCYD RYLLKSLQRA AETRGHSFWG RGPENGGSYN  420
SAPHETGFFC DGGDYDGHYG RFFLGWYSGV LLDHADRILS LARLVFGETR IVAKLPGIHW  480
WYKTASHAAE LTAGYNNSCN RDGYGAAMAV LKKHGTSALL FPNGEMDFSE EESLADPDGL  540
AWQVTNCGWD SEVEMVLESS LPSNGGGYGY LVEKAKPLGH PDGKHFSSFT FLRLNPLVIM  600
ERHNLNEFES FVRKMHG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1q6e_A	1e-128	190	617	11	443	beta-amylase
1q6f_A	1e-128	190	617	11	443	beta-amylase
1q6g_A	1e-128	190	617	11	443	beta-amylase
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093139.1	0.0	beta-amylase 7
Swissprot	O80831	0.0	BAM7_ARATH; Beta-amylase 7
TrEMBL	S8DLK2	0.0	S8DLK2_9LAMI; Beta-amylase (Fragment)
STRING	Migut.N01443.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1607	24	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	0.0	beta-amylase 7

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]