PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS60437.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

LBD

Protein Properties

Length: 118aa MW: 13510.7 Da PI: 9.9268

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS60437.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	108.4	5.3e-34	12	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer..edamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 aCaaCk++rr+C+++C lap fpa++pk f+ vh+lFG++n+++ll++l++++r ++a++s+ ++A +r r PvyG++ i++l+ q++ ++++l+++ EPS60437.1 12 ACAACKYQRRRCKPECLLAPFFPADDPKMFQSVHRLFGVKNIQNLLRQLSPDRRamSTAVKSVKFHAYMRDRYPVYGCLVEIHHLSCQIQAAQEQLQAV 110 7**********************************************9999866789***********************************998 PP DUF260 98 kee 100 ++ EPS60437.1 111 LNQ 113 776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.592	11	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.8E-32	12	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MTLKSGSGSG QACAACKYQR RRCKPECLLA PFFPADDPKM FQSVHRLFGV KNIQNLLRQL 60 SPDRRAMSTA VKSVKFHAYM RDRYPVYGCL VEIHHLSCQI QAAQEQLQAV LNQISYYR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-26	8	117	7	114	LOB family transfactor Ramosa2.1
5ly0_B	6e-26	8	117	7	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071735.1	2e-58	LOB domain-containing protein 27
Swissprot	Q9STS6	2e-34	LBD27_ARATH; LOB domain-containing protein 27
TrEMBL	S8DLL2	8e-83	S8DLL2_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.D01865.1.p	2e-56	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1449	23	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	6e-37	LOB domain-containing protein 27

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Kim MJ,Kim M,Kim J Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis. Plant Signal Behav, 2015. 10(8): p. e1044193 [PMID:26252070] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]