PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS60442.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family GATA
Protein Properties Length: 144aa    MW: 15160.1 Da    PI: 8.6826
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS60442.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA603.1e-195790134
        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                C+ C ttkTplWR+gp g+k+LCnaCG+++rk +
  EPS60442.1 57 CADCSTTKTPLWRSGPKGPKSLCNACGIRQRKAR 90
                ********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.6375187IPR000679Zinc finger, GATA-type
SMARTSM004013.5E-1751102IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.28E-135292No hitNo description
Gene3DG3DSA:3.30.50.102.4E-165591IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.19E-125686No hitNo description
PfamPF003205.7E-175790IPR000679Zinc finger, GATA-type
PROSITE patternPS0034405782IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MNNLQHEDSD GQRPPTDDEG IMRMPKKSRG GGGSEEAAAA ASPLEPDPGG SHGHRVCADC  60
STTKTPLWRS GPKGPKSLCN ACGIRQRKAR RAIEAAAAAT VEDSGLFNKK KAKHLAAIHS  120
RVSTEDDRDA AILLMALSLG LIHG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010925019.17e-26protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
SwissprotQ9FJ108e-20GAT16_ARATH; GATA transcription factor 16
TrEMBLS8DLL41e-100S8DLL4_9LAMI; Uncharacterized protein
STRINGGLYMA15G18380.12e-24(Glycine max)
STRINGXP_008797761.19e-26(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19992362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.15e-17GATA transcription factor 16
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]