PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS60506.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C2H2
Protein Properties Length: 207aa    MW: 23531.7 Da    PI: 8.7299
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS60506.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-054766120
                EEETTTTEEESSHHHHHHHH CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                ++Cp C k+F+r  n++ H+
  EPS60506.1 47 FSCPVCAKTFNRFNNMQMHM 66
                89*****************9 PP
2zf-C2H214.50.0001132154123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C +Cgk+F  + + ++H +++
  EPS60506.1 132 FGCRKCGKPFAVRGDWRTHEKNC 154
                 56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.9E-53870No hitNo description
Gene3DG3DSA:3.30.160.604.9E-64766IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.4294774IPR007087Zinc finger, C2H2
SMARTSM003550.274769IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
SMARTSM0035511095127IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.5E-4130152IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355140132152IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
QNNGGESGVT VALHIGLTPN GVSDSGPCEM GYWIPSPAQI LVGPTQFSCP VCAKTFNRFN  60
NMQMHMWGHG SEYRKGPESL RGTKQPSSIL KLPCYCCSQG CKNNIDHPRS KPLKDFRTLQ  120
THYKRKHCSK PFGCRKCGKP FAVRGDWRTH EKNCGKLWFC VCGSDFKHKR SLKDHVRAFG  180
EGHQPHDQSF FFRDRMFVDE MDSDEDD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077223.11e-114zinc finger protein WIP6
SwissprotQ9FX681e-102ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLS8C7Z01e-154S8C7Z0_9LAMI; Uncharacterized protein (Fragment)
STRINGVIT_01s0011g03100.t011e-112(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-105C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]