PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS60735.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family LSD
Protein Properties Length: 112aa    MW: 11771.9 Da    PI: 8.0714
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS60735.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD140.35.1e-13731125
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                C+gCr lL+YP GA++V+CalC  V
  EPS60735.1  7 CSGCRSLLMYPSGATNVCCALCSSV 31
                **********************876 PP
2zf-LSD142.21.3e-134670125
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                CggCrtlL+Y+r A sVRC++C+tV
  EPS60735.1 46 CGGCRTLLMYTRAAASVRCSCCHTV 70
                ************************9 PP
3zf-LSD149.19.3e-1683106124
     zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                 Cg+C+t+L+YP+GApsV+Ca+C+ 
  EPS60735.1  83 CGNCHTTLMYPYGAPSVKCAICQY 106
                 **********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.4E-13434IPR005735Zinc finger, LSD1-type
PfamPF069434.4E-11731IPR005735Zinc finger, LSD1-type
SuperFamilySSF486952.51E-52288IPR011031Multihaem cytochrome
TIGRFAMsTIGR010532.1E-154372IPR005735Zinc finger, LSD1-type
PfamPF069436.4E-114670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.5E-1280109IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-1483107IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MQSQIVCSGC RSLLMYPSGA TNVCCALCSS VTTVPPPGME MAQLICGGCR TLLMYTRAAA  60
SVRCSCCHTV NLAPAANIAH INCGNCHTTL MYPYGAPSVK CAICQYITNV NV
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011069944.15e-71protein LSD1
SwissprotQ6ASS28e-55LOL3_ORYSJ; Protein LOL3
TrEMBLS8C1T21e-73S8C1T2_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.J01511.1.p8e-68(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16792467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.11e-55lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]