PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS60880.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family HD-ZIP
Protein Properties Length: 123aa    MW: 14850.8 Da    PI: 10.0675
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS60880.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.95.6e-212173456
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                ++++++eq++ Le++F  ++++  e++ ++A+ lgL+ rqV vWFqNrRa++k
  EPS60880.1 21 KRKLSEEQVNMLERYFGDDHKLESERKDRIAADLGLDPRQVAVWFQNRRARWK 73
                45899***********************************************9 PP
2HD-ZIP_I/II116.21.8e-3720111293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +kr+ls+eqv++LE+ F  ++kLe+erK ++a +Lgl+prqvavWFqnrRAR+k+k+lE++y +Lk+++++   e++rLe++ ++L+e+l+e
   EPS60880.1  20 RKRKLSEEQVNMLERYFGDDHKLESERKDRIAADLGLDPRQVAVWFQNRRARWKSKKLEEEYLRLKAEHENSFVEKCRLETQLAKLKEQLDE 111
                  8****************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.9251575IPR001356Homeobox domain
SMARTSM003892.6E-201879IPR001356Homeobox domain
SuperFamilySSF466891.59E-172076IPR009057Homeodomain-like
CDDcd000863.32E-122076No hitNo description
PfamPF000463.1E-182173IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-202281IPR009057Homeodomain-like
PRINTSPR000311.9E-54655IPR000047Helix-turn-helix motif
PROSITE patternPS0002705073IPR017970Homeobox, conserved site
PRINTSPR000311.9E-55571IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
QPRRRRKKNQ AEGEDAAAMR KRKLSEEQVN MLERYFGDDH KLESERKDRI AADLGLDPRQ  60
VAVWFQNRRA RWKSKKLEEE YLRLKAEHEN SFVEKCRLET QLAKLKEQLD EAEREIQRLS  120
ERG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1522RKKNQAEGEDAAAMRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099589.21e-54homeobox-leucine zipper protein ATHB-40
SwissprotO232081e-53ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLS8C2962e-81S8C296_9LAMI; Uncharacterized protein (Fragment)
STRINGPOPTR_0005s12760.13e-53(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.15e-56homeobox protein 40
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]