PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS60937.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

M-type_MADS

Protein Properties

Length: 57aa MW: 6416.59 Da PI: 11.3905

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS60937.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	57.4	1.8e-18	14	56	1	43
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 k+ien s r vtfskRr gi+KK +E++vL + e+a+i+ s + EPS60937.1 14 KKIENMSSRRVTFSKRRGGIFKKSSEICVLSGSEIAIIVESIS 56 78************************************98865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	6.54E-19	6	55	IPR002100	Transcription factor, MADS-box
SMART	SM00432	7.6E-16	6	57	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	22.049	6	57	IPR002100	Transcription factor, MADS-box
CDD	cd00120	2.94E-19	7	57	No hit	No description
PRINTS	PR00404	1.5E-16	8	28	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.0E-18	15	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-16	28	43	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-16	43	57	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 57 aa Download sequence Send to blast
MNKITQGRRK IEMKKIENMS SRRVTFSKRR GGIFKKSSEI CVLSGSEIAI IVESISG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269\|PubMed:18334668}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022860376.1	5e-22	agamous-like MADS-box protein AGL62
Swissprot	Q9FKK2	9e-15	AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBL	S8DMQ4	5e-30	S8DMQ4_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.B00482.1.p	6e-18	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36590.1	4e-18	M-type_MADS family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Xu W, et al. Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds. Plant Cell, 2016. 28(6): p. 1343-60 [PMID:27233529] Figueiredo DD,Batista RA,Roszak PJ,Köhler C Auxin production couples endosperm development to fertilization. Nat Plants, 2015. 1: p. 15184 [PMID:27251719] Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C Auxin production in the endosperm drives seed coat development in Arabidopsis. Elife, 2017. [PMID:27848912] Fiume E,Coen O,Xu W,Lepiniec L,Magnani E Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal. Plant Signal Behav, 2017. 12(8): p. e1339000 [PMID:28613109] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]