PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS60950.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

FAR1

Protein Properties

Length: 187aa MW: 21312.4 Da PI: 10.1108

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS60950.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	81.5	1.4e-25	27	117	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA++vGF vr+ + + s+++g++ r++ C+k+g++ +++ k ++k +ra+ r gCka++ k++k+g+w vt++++eHnH+l+ EPS60950.1 27 RFYHDYARRVGFVVRIMQRRCSEMDGRTLARRLGCNKQGFSPPTTAKgKKKVAGRRASAREGCKATILFKLDKSGNWAVTRFVKEHNHPLV 117 5**************************************999988445555699*******************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-24	27	117	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
RDDEIDEGGS PSPYVGMEFK SEDEARRFYH DYARRVGFVV RIMQRRCSEM DGRTLARRLG 60 CNKQGFSPPT TAKGKKKVAG RRASAREGCK ATILFKLDKS GNWAVTRFVK EHNHPLVVLP 120 TPASHSQFPI IDKDKKIQQL TLELKQQEEL CSSYRNKLLS LLDCIQKQTD ELSSKLLTVS 180 QNIRKGE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012833525.1	5e-80	PREDICTED: protein FAR1-RELATED SEQUENCE 12
TrEMBL	S8C2D2	1e-137	S8C2D2_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.N00673.1.p	5e-79	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11602	20	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	8e-51	FAR1 family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]