PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS60989.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

TCP

Protein Properties

Length: 294aa MW: 31947 Da PI: 9.8989

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS60989.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.1	4.6e-36	27	112	3	86
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnss 86 +kk + +++h+kv gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+ a+p+i+++tgt++++a+++ ++ + ++sas+ s EPS60989.1 27 VKKPPAKDRHSKVCGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRHAEPSIIAATGTGTTPANFSsvSPTAGRNSASSAS 112 6999***********************************************************99999877554444444444211 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.4E-31	32	118	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.521	32	86	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MSSPPSDVPE RTTTTTTTSI TTKTTGVKKP PAKDRHSKVC GRGRRIRMPI ICAARVFQLT 60 RELGHKSDGQ TIEWLLRHAE PSIIAATGTG TTPANFSSVS PTAGRNSASS ASALEHKDLS 120 HSLFNSAPTP FILGKRLRPD DDEIQQREVG KDDVTPPPGS IGGFWALPTR PDFGQVWSFA 180 APPLEISSSL RFLQQQQPHL ELGEASAARA GNYLPIAQVH GHHLNLLASQ SSGAPPPQLS 240 ERQREADADS KKIDADFTFV IRSVSVRCPR SSFISFIGEI AGKFGFDVRY SQLW

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022868503.1	1e-107	transcription factor TCP7-like
Refseq	XP_022868504.1	1e-107	transcription factor TCP7-like
Swissprot	Q9FMX2	1e-72	TCP7_ARATH; Transcription factor TCP7
TrEMBL	S8C2V8	0.0	S8C2V8_9LAMI; Uncharacterized protein
STRING	Solyc01g008230.2.1	9e-77	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3951	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-66	TCP family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]