PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS61036.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family B3
Protein Properties Length: 145aa    MW: 16703.4 Da    PI: 9.2975
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS61036.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.63.4e-1633120398
                 EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 k+++p      +r+ ++  +++++ +   + +  ++l+d++g++W++++  +k +g++++ +GW +F k  +Lk  D++vF++d++ +f  +vkvf 
  EPS61036.1  33 KIFLP--DRCAQRIQISPVYVKKYsK---TVKERIILKDSDGKQWQIEV--KKDGGAVYMCNGWPDFIKHYDLKYADMLVFTYDRSYSF--NVKVFG 120
                 44422..2233445666667777733...33446***************..********************************998888..899886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.5219122IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-2127124IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-2127124IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-931122IPR003340B3 DNA binding domain
CDDcd100172.41E-1531119No hitNo description
PfamPF023622.0E-1333119IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MIILPIPNST FRLASAVDLR ATVAKYEKAE FFKIFLPDRC AQRIQISPVY VKKYSKTVKE  60
RIILKDSDGK QWQIEVKKDG GAVYMCNGWP DFIKHYDLKY ADMLVFTYDR SYSFNVKVFG  120
SNGCRKDPPT AIDDFDVLSV KSEPL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLS8C9K41e-103S8C9K4_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1600666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-16B3 family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]