PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS61056.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C2H2
Protein Properties Length: 179aa    MW: 20605.6 Da    PI: 10.3179
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS61056.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.5e-064769123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                + C+ C+k F r  nL+ H r H
  EPS61056.1 47 FICEVCNKGFQREQNLQLHRRGH 69
                89*******************88 PP
2zf-C2H215.35.7e-05123145123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ykC +C+k +  +s+ k H +t+
  EPS61056.1 123 YKCDKCSKKYAVQSDWKAHSKTC 145
                 9******************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.28E-94669No hitNo description
Gene3DG3DSA:3.30.160.601.4E-64669IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.994769IPR007087Zinc finger, C2H2
SMARTSM003550.00524769IPR015880Zinc finger, C2H2-like
PfamPF121716.2E-64769IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
SMARTSM0035514088118IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.9E-6111144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.28E-9118143No hitNo description
SMARTSM0035580123143IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
QQQQLLQQQL PSSSSSVKRK RNQPGNPNPD AEVVALSPKT LMATNRFICE VCNKGFQREQ  60
NLQLHRRGHN LPWKLRQKTT KEVKRKVYLC PEPTCIHHDP SRALGDLTGI KKHYSRKHGE  120
KKYKCDKCSK KYAVQSDWKA HSKTCGTREY RCDCGILFSR RDSFVTHRAF CDALAHDGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-33119179363Zinc finger protein JACKDAW
5b3h_F3e-33119179363Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020547771.11e-116protein indeterminate-domain 5, chloroplastic-like
SwissprotQ8GYC11e-110IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLS8C9L71e-131S8C9L7_9LAMI; Uncharacterized protein (Fragment)
STRINGVIT_01s0010g02090.t011e-112(Vitis vinifera)
STRINGevm.model.supercontig_2.891e-112(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-100indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]