PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS61135.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family M-type_MADS
Protein Properties Length: 107aa    MW: 12759.8 Da    PI: 9.9799
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS61135.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.93.5e-25958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                k+ien++nrqvtfskRr g++KKA+E+ +LCd++ a+i++s++g+l  +s
  EPS61135.1  9 KKIENTTNRQVTFSKRRYGLIKKAYEIAILCDIDLALIMLSPSGRLSHFS 58
                78********************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.2E-32160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.572161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-28291IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-23323IPR002100Transcription factor, MADS-box
PfamPF003193.0E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-233859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MGRSKLPIKK IENTTNRQVT FSKRRYGLIK KAYEIAILCD IDLALIMLSP SGRLSHFSGR  60
KRVEDVIYRY VNLSDRDREW IVPNKEEIQK QIIEMQHQLE KDEEQLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-17175174MEF2 CHIMERA
6byy_B7e-17175174MEF2 CHIMERA
6byy_C7e-17175174MEF2 CHIMERA
6byy_D7e-17175174MEF2 CHIMERA
6bz1_A7e-17175174MEF2 CHIMERA
6bz1_B7e-17175174MEF2 CHIMERA
6bz1_C7e-17175174MEF2 CHIMERA
6bz1_D7e-17175174MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097601.15e-60agamous-like MADS-box protein AGL66
SwissprotQ1PFC21e-36AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBLS8C2V22e-72S8C2V2_9LAMI; Uncharacterized protein
STRINGMigut.H02390.1.p3e-49(Erythranthe guttata)
STRINGORGLA08G0167200.15e-48(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61831925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.16e-28AGAMOUS-like 66
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]