PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS61236.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family B3
Protein Properties Length: 198aa    MW: 22627.3 Da    PI: 10.1508
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS61236.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3105.33e-336110199
                 EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                 f+k+ltpsdv+k++rlv+pk++ae++        +   e+++ l +ed  g+ W+++++y+++s++yvltkGW++Fvk+++L++gD+vvF+++++  ++
  EPS61236.1   6 FEKALTPSDVGKLNRLVIPKQHAERYlpmnggvdS--GENGVLLNFEDDAGKIWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVVFSRHRSIAGR 102
                 99****************************98642..34789*************************************************98888999 PP

                 .EEEEE-S CS
          B3  92 lvvkvfrk 99 
                 l+++++rk
  EPS61236.1 103 LFIGWRRK 110
                 ******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.8E-402115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.54E-314111IPR015300DNA-binding pseudobarrel domain
CDDcd100171.28E-28598No hitNo description
PROSITE profilePS5086314.6356111IPR003340B3 DNA binding domain
PfamPF023626.2E-306110IPR003340B3 DNA binding domain
SMARTSM010191.4E-256111IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
DREQLFEKAL TPSDVGKLNR LVIPKQHAER YLPMNGGVDS GENGVLLNFE DDAGKIWRFR  60
YSYWNSSQSY VLTKGWSRFV KEKRLDAGDV VVFSRHRSIA GRLFIGWRRK KNKNPVASPS  120
PPQNGIFSGQ NYAPKTGPSS STHQIGSSVS SGNSKRLRLF GVNMEFQRDE SEPSIPEDSP  180
IAVHFYHNHH HQYYPYQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-5011103113B3 domain-containing transcription factor NGA1
5os9_B5e-5011103113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094282.11e-74B3 domain-containing protein At2g36080
SwissprotQ8GYJ22e-63Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLS8CA511e-145S8CA51_9LAMI; Uncharacterized protein (Fragment)
STRINGVIT_08s0007g02810.t013e-69(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38012446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.14e-65B3 family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Tanaka M, et al.
    The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
    Plant Cell, 2016. 28(11): p. 2830-2849
    [PMID:27760805]