PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS61273.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

G2-like

Protein Properties

Length: 69aa MW: 8244.51 Da PI: 11.6019

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS61273.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.5	1.3e-32	10	65	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a+++LGGs+ AtPk+i+e+mkv+gLt+++vkSHLQkYRl+ EPS61273.1 10 KARRCWSPELHQRFLHALQRLGGSNLATPKQIRETMKVDGLTNDEVKSHLQKYRLH 65 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.075	7	67	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.9E-29	7	68	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.67E-18	9	67	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.7E-28	10	65	IPR006447	Myb domain, plants
Pfam	PF00249	6.7E-9	12	63	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 69 aa Download sequence Send to blast
KRKQAKEERK ARRCWSPELH QRFLHALQRL GGSNLATPKQ IRETMKVDGL TNDEVKSHLQ 60 KYRLHSRRP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-17	10	63	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-17	10	63	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-17	10	63	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-17	10	63	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-17	10	63	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-17	10	63	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-17	10	63	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-17	10	63	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-17	10	63	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-17	10	63	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-17	10	63	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-17	10	63	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003631224.1	5e-34	PREDICTED: myb family transcription factor EFM
Refseq	XP_009413646.1	5e-34	PREDICTED: myb family transcription factor EFM-like
Refseq	XP_021857301.1	6e-34	transcription factor HHO2-like isoform X1
Refseq	XP_021857302.1	6e-34	transcription factor HHO2-like isoform X2
Swissprot	Q9FPE8	9e-34	HHO3_ARATH; Transcription factor HHO3
TrEMBL	S8DEQ1	3e-43	S8DEQ1_9LAMI; Uncharacterized protein (Fragment)
STRING	VIT_01s0011g03110.t01	2e-33	(Vitis vinifera)
STRING	GSMUA_Achr8P18270_001	2e-33	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5219	24	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	5e-32	G2-like family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]