PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS61311.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family YABBY
Protein Properties Length: 121aa    MW: 13530.7 Da    PI: 9.4866
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS61311.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY100.92.8e-3121212134
       YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100
                 +v   s++v yv+CnfCntil+v vP + l+++ tvrC  C++llsvnl+ +  +    ++         ++++     +++   ++  s+s+ ++   
  EPS61311.1   2 SVEMVSDRVSYVHCNFCNTILVVGVPCSNLLTIATVRCERCSNLLSVNLSGSLPQSLHRQD--------FQKQKS--LAAIDLPFKEIGSSSKCKRLCP 90 
                 67889*******************************************9987533322222........222222..2334444444444555555555 PP

       YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfik 134
                 +s++++  ++++ p irPPekrqrvPsaynrfik
  EPS61311.1  91 MSNDDQ--ATKTSP-IRPPEKRQRVPSAYNRFIK 121
                 555444..445556.9*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046908.3E-366121IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MSVEMVSDRV SYVHCNFCNT ILVVGVPCSN LLTIATVRCE RCSNLLSVNL SGSLPQSLHR  60
QDFQKQKSLA AIDLPFKEIG SSSKCKRLCP MSNDDQATKT SPIRPPEKRQ RVPSAYNRFI  120
K
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552308.16e-49putative axial regulator YABBY 2 isoform X2
SwissprotQ9XFB02e-32YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLS8CAB81e-83S8CAB8_9LAMI; Uncharacterized protein
STRINGGorai.001G127000.19e-41(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38124163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.18e-28YABBY family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]