PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS61467.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

C2H2

Protein Properties

Length: 159aa MW: 18364.5 Da PI: 9.5236

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS61467.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00037	20	44	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C+ C+k ++ ++++ H+++ H EPS61467.1 20 FFCELCNKQYKLAMEFEAHLSSydH 44 67*****************987666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.79E-5	10	48	No hit	No description
Pfam	PF12171	2.0E-5	20	47	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	22	44	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
VLAEREHKIQ SDVKEIRKVF FCELCNKQYK LAMEFEAHLS SYDHNHRNRF KQMKDMQGSS 60 SRDDRQKREQ QRQEREMAKF LQMADVHKQQ QQQIHSDEPQ NSGGSSTISA TAVADQDQRK 120 VLKFGFGAKG VTPKSSLMRA GKKQKISVAS VFDNDSEED

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027108071.1	9e-73	G patch domain-containing protein 8-like
Refseq	XP_027114962.1	9e-73	G patch domain-containing protein 8-like
TrEMBL	S8DP38	1e-113	S8DP38_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.N00974.1.p	1e-71	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8604	14	15

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]