PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS61507.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

C2H2

Protein Properties

Length: 96aa MW: 10692.9 Da PI: 8.4048

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS61507.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.00019	1	23	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F+++ L H +H EPS61507.1 1 FQCKACKKVFNSHQALGGHRASH 23 89**************9999888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.4E-9	1	25	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.014	1	28	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.073	1	23	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	2.29E-7	1	23	No hit	No description
PROSITE pattern	PS00028	0	3	23	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.29E-7	53	80	No hit	No description
Pfam	PF13912	1.7E-11	57	81	IPR007087	Zinc finger, C2H2
SMART	SM00355	1	58	80	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.743	58	85	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	60	80	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 96 aa Download sequence Send to blast
FQCKACKKVF NSHQALGGHR ASHKRVKGCF AGGGVAEEET EENDEEEDKD SKRPKTTHEC 60 SVCRRIFSSG QALGGHKRCH WLAAPTQHSH SFIPNF

Functional Description ? help Back to Top
Source	Description
UniProt	Mediates the regulation of male germ cell division by DUO1. {ECO:0000269\|PubMed:24876252}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Activated by the transcription factor DUO1. {ECO:0000269\|PubMed:21285328}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011081399.1	2e-32	zinc finger protein ZAT1
Swissprot	Q9SIJ0	4e-25	ZAT2_ARATH; Zinc finger protein ZAT2
TrEMBL	S8DP66	2e-64	S8DP66_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.A00958.1.p	3e-30	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1910	22	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17180.1	9e-25	C2H2-like zinc finger protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]