PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS61532.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family M-type_MADS
Protein Properties Length: 156aa    MW: 18359.6 Da    PI: 10.4163
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS61532.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF503.8e-161050242
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                +i n+s r+ tf kR+ g++KK +EL +LC+++++ +++s+
  EPS61532.1 10 FITNDSSRKATFKKRKRGLMKKINELTTLCGIDACAVVYSP 50
                89*************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.9E-23160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.68149IPR002100Transcription factor, MADS-box
CDDcd002664.29E-31285No hitNo description
SuperFamilySSF554553.92E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-8323IPR002100Transcription factor, MADS-box
PfamPF003195.0E-181051IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MTRKKLKLAF ITNDSSRKAT FKKRKRGLMK KINELTTLCG IDACAVVYSP YDPKPDVWPD  60
PGGVRRILSQ FKHMPEMEQS KKMVNQEGFI RNRIAKATEQ LRKMRKENRE REMTQLMYEC  120
LTGKGVEGLG YDELNDLGWM LEQRLKEIYK RVDVLR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKLKLAFITNDSSRKATFKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016464483.18e-78PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-62AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLS8DP821e-112S8DP82_9LAMI; Uncharacterized protein (Fragment)
STRINGPOPTR_0005s00420.19e-79(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15322367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-57AGAMOUS-like 80
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]