PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS61622.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

MYB_related

Protein Properties

Length: 279aa MW: 31626.6 Da PI: 8.3406

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS61622.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53	7.6e-17	29	73	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rW++eE+ ++++a k++G W++I +++g ++t+ q++s+ qk+ EPS61622.1 29 RERWSEEEHSRFLEALKLHGRA-WRKIEEHIG-TKTAVQIRSHAQKF 73 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.68E-16	23	76	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.902	24	78	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.1E-9	26	76	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.6E-16	27	76	IPR006447	Myb domain, plants
SMART	SM00717	1.3E-10	28	76	IPR001005	SANT/Myb domain
Pfam	PF00249	7.2E-14	29	72	IPR001005	SANT/Myb domain
CDD	cd00167	2.52E-9	31	74	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MDIEEQQSKY PTDEFAPKAR KPYTITKQRE RWSEEEHSRF LEALKLHGRA WRKIEEHIGT 60 KTAVQIRSHA QKFFCKVIRD DDTVEIPPPR PKRKPIHPYP RKLVSPVKGG ETLVPEKQMS 120 QSPKSILSAV GSSDSFDDDQ SPSSASSPAA ISDDHESVQA LHSDEDEFSS HEERHNPLEL 180 AARRAKEFNG RCLKLFGQTL CIVETDDDHL LLPLRVIPLK LTPLSKTSPW LSLSINAPDA 240 VNYDHSIKLS KCRSTTNSSN FGKKGFMPYR RSIATTEQS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	S8DPD4	0.0	S8DPD4_9LAMI; Uncharacterized protein
STRING	XP_009790907.1	1e-50	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3185	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37260.1	2e-34	MYB_related family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]