PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS61722.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family MYB
Protein Properties Length: 145aa    MW: 16633.9 Da    PI: 10.397
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS61722.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-161763248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g+W+ eEd++l+  ++++G  +W++ ++  g+ R++k+c++rw +yl
       EPS61722.1 17 GPWSVEEDDRLISFIRKHGHSNWRALPKQAGLSRCGKSCRLRWINYL 63
                     89*******************************************97 PP
2Myb_DNA-binding60.24.4e-1969114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE+++++d+++ lG++ W++Ia+ ++ gRt++++k+ w++yl
       EPS61722.1  69 RGNFTPEEEQRIIDLHASLGNK-WSKIASQLP-GRTDNEIKNVWNTYL 114
                      89********************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.2971163IPR017930Myb domain
SuperFamilySSF466896.25E-3114110IPR009057Homeodomain-like
SMARTSM007173.4E-131565IPR001005SANT/Myb domain
PfamPF002491.2E-151663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-241770IPR009057Homeodomain-like
CDDcd001672.78E-101863No hitNo description
PROSITE profilePS5129427.06264118IPR017930Myb domain
SMARTSM007172.8E-1568116IPR001005SANT/Myb domain
PfamPF002491.7E-1769114IPR001005SANT/Myb domain
CDDcd001675.76E-1171114No hitNo description
Gene3DG3DSA:1.10.10.602.7E-2871118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MGRGRTPCCD RSKVKTGPWS VEEDDRLISF IRKHGHSNWR ALPKQAGLSR CGKSCRLRWI  60
NYLRPDVKRG NFTPEEEQRI IDLHASLGNK WSKIASQLPG RTDNEIKNVW NTYLKKRVTL  120
RSSTYVEKKP EKSSTLECGD DSASS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29171188108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. {ECO:0000269|PubMed:19122102}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by UV light (PubMed:9839469). Triggered by salicylic acid and jasmonic acid (PubMed:16463103). Regulated by the SND1 close homologs NST1, NST2, VND6, and VND7 and their downstream targets MYB46 and MYB83 (PubMed:19122102, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:22197883, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027172731.19e-71transcription factor MYB58-like
SwissprotQ6R0A63e-68MYB63_ARATH; Transcription factor MYB63
TrEMBLS8DPK41e-103S8DPK4_9LAMI; Uncharacterized protein (Fragment)
STRINGPGSC0003DMT4000292355e-69(Solanum tuberosum)
STRINGfgenesh1_pg.C_scaffold_10014925e-69(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.11e-70myb domain protein 63
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Noda S, et al.
    The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63.
    Planta, 2015. 242(3): p. 589-600
    [PMID:26070439]
  4. Vargas L, et al.
    Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.
    Biotechnol Biofuels, 2016. 9: p. 139
    [PMID:27390589]