PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS61892.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

TCP

Protein Properties

Length: 246aa MW: 25641 Da PI: 10.613

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS61892.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	131.3	9.2e-41	6	128	3	105
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............ 88 + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLl qa+pai+++tgt++++a+++ ++s +ss+ + s + EPS61892.1 6 PPKQPTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLHQAEPAIIAATGTGTIPANFStLNVSLRSSGTTISTPsskssplflggs 104 5699****************************************************************9998777777777733333333455665555 PP TCP 89 .......kaaksaakskksqksaa 105 ++ +++++++++++ + EPS61892.1 105 aagmlgfHHHQFTTPHNFAHDASD 128 555555433333333333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.4E-38	11	126	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.031	11	65	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
AVAAKPPKQP TKDRHTKVDG RGRRIRMPAL CAARVFQLTR ELGHKSDGET IEWLLHQAEP 60 AIIAATGTGT IPANFSTLNV SLRSSGTTIS TPSSKSSPLF LGGSAAGMLG FHHHQFTTPH 120 NFAHDASDEN NYIKKRFRED AAIGGAASPK PSAGDPGTGL DPRQGSSQPP PSFVPAHAMW 180 AVAPAAAANI GNAFWMLPVA GGGTATAPHQ DWAYKAPGGG GRLSPMVLQQ QQKLGLGGGI 240 HLGMNL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00614	PBM	Transfer from AT1G35560	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006350337.1	1e-92	PREDICTED: transcription factor TCP23-like
Refseq	XP_009775051.1	2e-92	PREDICTED: transcription factor TCP23-like
Swissprot	Q9LQF0	2e-63	TCP23_ARATH; Transcription factor TCP23
TrEMBL	S8DQ71	1e-178	S8DQ71_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_009775051.1	9e-92	(Nicotiana sylvestris)
STRING	PGSC0003DMT400023981	4e-92	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35560.1	2e-50	TCP family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]