PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS61898.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

CAMTA

Protein Properties

Length: 145aa MW: 17069.5 Da PI: 9.4261

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS61898.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	158.7	1.1e-49	24	138	4	117
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101 e + rwlk+ e+ iL+n + +l+++ +++p+ gsl+Lyn+++++ frkDG+sw+k+ d +t rE+he+LKvg+ve+l+cyYah+eenp++ rrc+w+ EPS61898.1 24 EaQIRWLKPPEVFFILQNCNDQQLSSNVPHKPPGGSLFLYNKRVLKSFRKDGHSWRKRTDQRTAREAHERLKVGNVEALSCYYAHGEENPNLCRRCFWM 122 5588********************************************************************************************* PP CG-1 102 Leeelekivlvhylev 117 L+ ++e+ivlv+y+ev EPS61898.1 123 LDPAYEHIVLVQYREV 138 ************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	67.859	18	144	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	9.7E-60	21	139	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.5E-44	24	137	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
GFVVFVTSFR FMESGYDLAQ LAREAQIRWL KPPEVFFILQ NCNDQQLSSN VPHKPPGGSL 60 FLYNKRVLKS FRKDGHSWRK RTDQRTAREA HERLKVGNVE ALSCYYAHGE ENPNLCRRCF 120 WMLDPAYEHI VLVQYREVVQ GYLKT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086818.1	2e-61	calmodulin-binding transcription activator 4
Refseq	XP_022878236.1	1e-61	calmodulin-binding transcription activator 4-like isoform X1
Refseq	XP_022881693.1	8e-66	calmodulin-binding transcription activator 4-like isoform X1
Refseq	XP_022881694.1	4e-66	calmodulin-binding transcription activator 4-like isoform X2
Swissprot	Q9FYG2	4e-50	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	S8DGK0	1e-106	S8DGK0_9LAMI; Uncharacterized protein (Fragment)
STRING	Solyc05g015650.2.1	3e-60	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14489	8	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	2e-52	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]