PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS61937.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Dof

Protein Properties

Length: 230aa MW: 24995.8 Da PI: 8.4761

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS61937.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.2	1e-39	9	69	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprC+st+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rkn k+s EPS61937.1 9 HDQALKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNAKKS 69 7899*****************************************************8865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-28	3	63	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-33	10	67	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.789	13	67	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	15	51	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010067	Biological Process	procambium histogenesis
GO:0010087	Biological Process	phloem or xylem histogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MERRLRPQHD QALKCPRCES THTKFCYYNN YSLSQPRYFC KTCRRYWTKG GTLRNIPVGG 60 GCRKNAKKSA AAAAGKKPAA DFPNSAASSA SSSPLILNSP DAFSTFPLTI FTADQTDFSD 120 LQLGFSDQLQ FGSLNAAGLF PPAAANGYYL DNPVAADGFS GDGMVAGFDK FPVNYHGGDV 180 KPILSLEWHE NHHHHNQHQQ QVCNSGGYGN IGSWTGFMNA FGSSSTNPLV

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00580	DAP	Transfer from AT5G62940	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022737212.1	4e-53	LOW QUALITY PROTEIN: dof zinc finger protein DOF5.6-like
TrEMBL	S8DQA7	1e-172	S8DQA7_9LAMI; Uncharacterized protein
STRING	XP_009599905.1	4e-52	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4895	22	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62940.1	9e-38	Dof family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]