PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS61990.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ARF
Protein Properties Length: 397aa    MW: 44455.8 Da    PI: 9.1557
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS61990.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.52.9e-24139240199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae+        ++++ +  +l+ +d++g++W++++i+r++++r++lt+GW+ Fv a++L +gD+++F   ++++ +l
  EPS61990.1 139 FCKTLTASDTSTHGGFSVPRRAAEKVfppldytQSPPVQ--ELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVTAKKLVAGDSIIFI--WSENNQL 233
                 99****************************997777666..7************************************************..6777788 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  EPS61990.1 234 LLGIRRA 240
                 ***9997 PP
2Auxin_resp112.73.5e-37265348183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aaha +t+s+F+++YnPras+seFv+++++++ka++ ++vsvGmRf+m+f +e+ss  r++Gt++g+sdldpvrWpnS+Wrs+k
  EPS61990.1 265 AAHADATNSPFTIFYNPRASPSEFVIPLSRYVKAVYhTRVSVGMRFRMHFKNEESSVCRFMGTITGISDLDPVRWPNSRWRSVK 348
                 79999******************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.93E-46126267IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-42134254IPR015300DNA-binding pseudobarrel domain
CDDcd100171.78E-22138239No hitNo description
SMARTSM010199.1E-26139241IPR003340B3 DNA binding domain
PROSITE profilePS5086313.014139241IPR003340B3 DNA binding domain
PfamPF023622.2E-22139240IPR003340B3 DNA binding domain
PfamPF065074.2E-32265348IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
TVWDMKLSSS SSSGSGLNSQ SEEGEKKKCL NSELWHACAG PLVSLPQIGS RVVYFPQGHS  60
EQIAASTNKE VVDLTILSYP GLRPQLICQL HNVTMHADVE TDEVYAQMTL QPLTPQEQKD  120
MCPLPAVLGN LRQQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY TQSPPVQELI  180
AKDLHGNEWK FRHIFRGQPK RHLLTTGWSV FVTAKKLVAG DSIIFIWSEN NQLLLGIRRA  240
SRPQPVMPSS LLSSDSMHIG LLAAAAHADA TNSPFTIFYN PRASPSEFVI PLSRYVKAVY  300
HTRVSVGMRF RMHFKNEESS VCRFMGTITG ISDLDPVRWP NSRWRSVKVG WDESTAGGYR  360
QLRVSLWEIE PLTAYPMYTC PFSLRTKRPW SSGFPSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1552037541393Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357893.10.0PREDICTED: auxin response factor 6-like isoform X2
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLS8C5B50.0S8C5B5_9LAMI; Auxin response factor (Fragment)
STRINGPGSC0003DMT4000411270.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]