PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS62132.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Protein Properties

Length: 142aa MW: 16320.2 Da PI: 5.0018

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS62132.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.2	1.9e-10	62	120	33	87
-SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 33 sktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ++ lt++d++++s+ v+l + + +++++t+GW++F n+Lk+gD++ F+ +++ EPS62132.1 62 TRNLTVYDKTNESFHVTLVGepasDYRNRAFFFTGGWNRFIWYNDLKTGDVIEFYKIKE 120 45799***********778885555556**********************96644 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.43E-9	23	121	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.50E-8	55	135	No hit	No description
Gene3D	G3DSA:2.40.330.10	2.0E-7	63	120	IPR015300	DNA-binding pseudobarrel domain

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MTDPSSASSD NSRRFDRTNL ILTKVVKLET KDDLNILRLN ATETVTIVGD ISPISFPEDE 60 YTRNLTVYDK TNESFHVTLV GEPASDYRNR AFFFTGGWNR FIWYNDLKTG DVIEFYKIKE 120 RDEAGRSCYV VNCIKGKNNG QE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	S8DQR3	1e-100	S8DQR3_9LAMI; Uncharacterized protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]