PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS62199.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

C2H2

Protein Properties

Length: 351aa MW: 38519.6 Da PI: 9.6356

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS62199.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	2e-05	42	64	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H EPS62199.1 42 FICEICNKGFQRDQNLQLHRRGH 64 89*******************88 PP
2	zf-C2H2	11.8	0.00073	118	140	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + EPS62199.1 118 WKCDKCSKKYAVQSDWKAHSKIC 140 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.32E-7	41	64	No hit	No description
Gene3D	G3DSA:3.30.160.60	8.6E-6	41	64	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.845	42	64	IPR007087	Zinc finger, C2H2
Pfam	PF12171	3.9E-5	42	64	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.022	42	64	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	44	64	IPR007087	Zinc finger, C2H2
SMART	SM00355	120	83	113	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.5E-4	106	139	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.32E-7	113	138	No hit	No description
SMART	SM00355	150	118	138	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
NANPINPNSN PSKRKRSLPG TPDPEAEVVA LSPRSLMATN RFICEICNKG FQRDQNLQLH 60 RRGHNLPWKL KQRSNKEVKK KVYICPEKSC VHHDPARALG DLTGIKKHFS RKHGEKKWKC 120 DKCSKKYAVQ SDWKAHSKIC GTREYKCDCG TLFSRKDSFI THRAFCDALA EESARFPASA 180 ASAVANLSFK NEMMSGGVGM GSPQFPAMFR QEIGGLDSGS HQLNLDLQKP RLPIWLDSIG 240 NQGSSSSGVN FLSQNPASLP EFIQMNQWFS GDATAAIFPC ADGGSINIAS SSSSLPRILK 300 EEEESNKASS FSDAITSIYF QPESHAPPPM SATALLQKAA QMGSTRSTNS V

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

NANPINPNSN PSKRKRSLPG TPDPEAEVVA LSPRSLMATN RFICEICNKG FQRDQNLQLH  60
RRGHNLPWKL KQRSNKEVKK KVYICPEKSC VHHDPARALG DLTGIKKHFS RKHGEKKWKC  120
DKCSKKYAVQ SDWKAHSKIC GTREYKCDCG TLFSRKDSFI THRAFCDALA EESARFPASA  180
ASAVANLSFK NEMMSGGVGM GSPQFPAMFR QEIGGLDSGS HQLNLDLQKP RLPIWLDSIG  240
NQGSSSSGVN FLSQNPASLP EFIQMNQWFS GDATAAIFPC ADGGSINIAS SSSSLPRILK  300
EEEESNKASS FSDAITSIYF QPESHAPPPM SATALLQKAA QMGSTRSTNS V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-36	114	178	3	67	Zinc finger protein JACKDAW
5b3h_F	3e-36	114	178	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011089318.1	1e-173	protein indeterminate-domain 9
Swissprot	Q9SCQ6	1e-114	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	S8C619	0.0	S8C619_9LAMI; Zinc finger family protein (Fragment)
STRING	XP_009612448.1	1e-151	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-98	indeterminate(ID)-domain 2

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]