PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS62262.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

HD-ZIP

Protein Properties

Length: 146aa MW: 16572.9 Da PI: 10.4428

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS62262.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.9	3.5e-18	25	79	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Le+ F+ n+ +++++++eLA++l+L rqV vWFqNrRa+ k EPS62262.1 25 RKKLRLSKTQSALLEQSFKINSSLNQKQKQELAEELKLRPRQVEVWFQNRRARTK 79 788899***********************************************98 PP
2	HD-ZIP_I/II	113.2	1.7e-36	25	112	1	88
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rlsk q++lLE+sF+ ++ L++++K+ela+eL+l+prqv+vWFqnrRARtk+kq+E d+++Lk+ +d+l++en+ L+++v++L+ EPS62262.1 25 RKKLRLSKTQSALLEQSFKINSSLNQKQKQELAEELKLRPRQVEVWFQNRRARTKLKQTEIDCAFLKKYCDTLTAENRWLQRQVKALK 112 69************************************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-17	12	79	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.25E-18	14	82	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.605	21	81	IPR001356	Homeobox domain
SMART	SM00389	6.0E-15	23	85	IPR001356	Homeobox domain
Pfam	PF00046	1.6E-15	25	79	IPR001356	Homeobox domain
CDD	cd00086	1.84E-14	25	82	No hit	No description
PROSITE pattern	PS00027	0	56	79	IPR017970	Homeobox, conserved site
Pfam	PF02183	2.3E-7	81	113	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	5.4E-13	81	121	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
DVSFAVKRER VSPSSEDDDS PNSSRKKLRL SKTQSALLEQ SFKINSSLNQ KQKQELAEEL 60 KLRPRQVEVW FQNRRARTKL KQTEIDCAFL KKYCDTLTAE NRWLQRQVKA LKSGQPTYVQ 120 FPAVAALALC PSCERVSAAA KPSTTA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	23	29	SRKKLRL
2	73	81	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012854241.1	1e-56	PREDICTED: homeobox-leucine zipper protein HAT22-like
Refseq	XP_017237931.1	1e-56	PREDICTED: homeobox-leucine zipper protein HAT22-like isoform X2
Swissprot	P46665	2e-51	HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBL	S8DR18	1e-100	S8DR18_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.H00315.1.p	5e-56	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	4e-50	HD-ZIP family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]