PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS62345.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family TCP
Protein Properties Length: 151aa    MW: 17880.7 Da    PI: 6.1057
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS62345.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1501.5e-4641512132
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssa......sec...eaesssssasns 85 
                 agkkdrhski+T++g RdRR+Rls++ a++fFdLqd+LG+dk+sktieWL+qq+k+ai el ++      +   a      sec   +     +++ n+
  EPS62345.1   4 AGKKDRHSKICTAQGIRDRRMRLSLQAARKFFDLQDMLGYDKASKTIEWLFQQSKKAIEELSESsnfsnsD---ArsesfvSECevvS---GIEESCNK 96 
                 89**************************************************************7665331...14444554443331...11111122 PP

         TCP  86 ssg........kaaksaakskksqksaasalnlakesrakarararertrekmri 132
                 + +        +++++++ ++k++ ++  ++   +esr+kararar rtrekm++
  EPS62345.1  97 NDNtneeveeeEEEPEEEDEEKKNPRNDVVRRNTRESREKARARARWRTREKMMN 151
                 22233456665444444433333333334588888******************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.2E-475150IPR005333Transcription factor, TCP
PROSITE profilePS5136935.712664IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.075131148IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
RRRAGKKDRH SKICTAQGIR DRRMRLSLQA ARKFFDLQDM LGYDKASKTI EWLFQQSKKA  60
IEELSESSNF SNSDARSESF VSECEVVSGI EESCNKNDNT NEEVEEEEEE PEEEDEEKKN  120
PRNDVVRRNT RESREKARAR ARWRTREKMM N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-161165155Putative transcription factor PCF6
5zkt_B5e-161165155Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071262.29e-52transcription factor TCP12
TrEMBLS8C6E91e-104S8C6E9_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_009757682.11e-42(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24362359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.16e-30TCP domain protein 12
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]