PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS62348.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Dof

Protein Properties

Length: 194aa MW: 19781.8 Da PI: 8.065

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS62348.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.1	9.4e-39	5	64	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++l+cprCdstntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGgg+rkn k+s EPS62348.1 5 PEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRS 64 57899***************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.7E-33	7	62	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.264	8	62	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	10	46	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	5.0E-23	12	62	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
PPPEPEHLPC PRCDSTNTKF CYYNNYNFSQ PRHFCKSCRR YWTHGGTLRD IPVGGGSRKN 60 AKRSRTGPAA MGSAATGVSG FAAAAAAAHH GFSASGDHGG GAPCFGDFLN AQGWGLGGFG 120 FGFGQRFGLE DVGFGIGRSL WPISGFVESG SGSMGGSSAG GYAWQSESGG GGFPGGGDCF 180 VLPELAISTP GGSL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00593	DAP	Transfer from AT5G66940	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099306.1	1e-75	dof zinc finger protein DOF3.4
TrEMBL	S8DI11	1e-135	S8DI11_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.H00486.1.p	7e-64	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4532	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	1e-33	OBF binding protein 1

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]