PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS62375.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Dof

Protein Properties

Length: 182aa MW: 19685 Da PI: 8.2836

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS62375.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	115.9	1.7e-36	2	57	5	60
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 l+cprC+s ntkfCy+nny+ sqPr+fCk+CrryWtkGGalrn+PvGgg+rk+ EPS62375.1 2 RLNCPRCNSPNTKFCYFNNYNFSQPRHFCKSCRRYWTKGGALRNIPVGGGTRKRPP 57 689*************************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-24	1	54	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.7E-31	2	55	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.658	3	57	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	5	41	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
QRLNCPRCNS PNTKFCYFNN YNFSQPRHFC KSCRRYWTKG GALRNIPVGG GTRKRPPKRS 60 GKRLVEIEVN GRRSPTEIAA AATTSPVDVA VMGDNFTGDS NDINGCCFSF TSLLTSDRLL 120 DGLGPSSGLA TINYGHISDS DPNPGHVVDV NSLLLDGLFT AEFHDSAAAP WPDLAVYAPG 180 ST

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	O82155	6e-32	DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBL	S8C6H0	1e-132	S8C6H0_9LAMI; Uncharacterized protein (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	3e-34	DOF zinc finger protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]