PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS62527.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family CPP
Protein Properties Length: 171aa    MW: 19232 Da    PI: 8.5352
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS62527.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.38.6e-151148240
         TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
                ++++CnCk+s+Clk+YCeCfaa ++C+  C+C +C+N+ 
  EPS62527.1 11 KQRQCNCKNSRCLKLYCECFAAATYCDG-CNCVNCHNNV 48
                799*************************.********85 PP
2TCR52.87.8e-1787125240
         TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                 ++kgC+Ckks ClkkYCeC++a+  Cse+C+C dCkN e
  EPS62527.1  87 HNKGCHCKKSTCLKKYCECYQANILCSEKCRCVDCKNYE 125
                 89***********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011145.2E-161050IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.24611126IPR005172CRC domain
PfamPF036381.0E-111347IPR005172CRC domain
SMARTSM011143.6E-1986127IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.3E-1289124IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
NADRNGVTPK KQRQCNCKNS RCLKLYCECF AAATYCDGCN CVNCHNNVVY DEFRRESMVA  60
ILERRPDAFK PKVASSPHGP SDRLVEHNKG CHCKKSTCLK KYCECYQANI LCSEKCRCVD  120
CKNYEGSEER KVHFLHHHQP PSIVSIQQAV NVSINSAIGS PASKIKAQNF G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-311213211129Protein lin-54 homolog
5fd3_B7e-311213211129Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012076724.18e-69protein tesmin/TSO1-like CXC 5 isoform X2
RefseqXP_012076725.17e-69protein tesmin/TSO1-like CXC 5 isoform X4
SwissprotQ9SZD14e-65TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLS8DRU71e-122S8DRU7_9LAMI; Uncharacterized protein (Fragment)
STRINGPOPTR_0006s16340.11e-67(Populus trichocarpa)
STRINGPOPTR_0018s08960.13e-68(Populus trichocarpa)
STRINGXP_006451190.13e-67(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24012455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-57Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]