PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS62631.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

MYB_related

Protein Properties

Length: 485aa MW: 54016 Da PI: 9.7472

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS62631.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.2	3.7e-08	390	439	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r ++T E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ EPS62631.1 390 RRPFTVAEVEALVQAVEKLGTGRWRDVKLRAFenaKHRTYVDLKDKWKTL 439 679*********************9888888************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.007	385	444	IPR017930	Myb domain
SMART	SM00717	1.1E-7	389	442	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.1E-11	390	440	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.13E-16	391	472	IPR009057	Homeodomain-like
CDD	cd11660	4.08E-17	391	441	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MARLDDYGFD GYYHLPPVPR AARSIRAKLS RSRTRCLFRK RAADADAGPH RNSFAFDLLS 60 NEEADFCKGG RGDFLVTELV SDRRDEPERP ASGITCCSDG GGGGGGSGND ECRLRLGMFS 120 PPMPSSSSLQ EEQQDGYVNN NNNKEEEEWD DDEEKKPPAF VSSADSVRHD NENLSLKKPF 180 GEDNDEGISD PNRKSSSRCF RDYPFKKRKL FDSQAIPTPS GGGGGGHDSS PLRSHDSKVK 240 LKIKSFKVPE LVIEIPETAT IGSLQRRVMK AITAVLGGGL RVGVTLHGKK IRDDTKTLLQ 300 AGICHENSRI DALGFSLEPS PPTPPLQIHP ENRTTPLPMI PPPMMMMMIA GQNNSDRDSP 360 SRRRLTATES KALVPFRKSK RSESAQRRIR RPFTVAEVEA LVQAVEKLGT GRWRDVKLRA 420 FENAKHRTYV DLKDKWKTLV HTARISPQQR RGEPVPQELL DRVLTAHAFW SQQQLKAQPN 480 SSLLL

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MARLDDYGFD GYYHLPPVPR AARSIRAKLS RSRTRCLFRK RAADADAGPH RNSFAFDLLS  60
NEEADFCKGG RGDFLVTELV SDRRDEPERP ASGITCCSDG GGGGGGSGND ECRLRLGMFS  120
PPMPSSSSLQ EEQQDGYVNN NNNKEEEEWD DDEEKKPPAF VSSADSVRHD NENLSLKKPF  180
GEDNDEGISD PNRKSSSRCF RDYPFKKRKL FDSQAIPTPS GGGGGGHDSS PLRSHDSKVK  240
LKIKSFKVPE LVIEIPETAT IGSLQRRVMK AITAVLGGGL RVGVTLHGKK IRDDTKTLLQ  300
AGICHENSRI DALGFSLEPS PPTPPLQIHP ENRTTPLPMI PPPMMMMMIA GQNNSDRDSP  360
SRRRLTATES KALVPFRKSK RSESAQRRIR RPFTVAEVEA LVQAVEKLGT GRWRDVKLRA  420
FENAKHRTYV DLKDKWKTLV HTARISPQQR RGEPVPQELL DRVLTAHAFW SQQQLKAQPN  480
SSLLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2juh_A	5e-54	377	474	4	101	Telomere binding protein TBP1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011089486.1	1e-114	telomere repeat-binding protein 2
Refseq	XP_011089488.1	1e-114	telomere repeat-binding protein 2
Refseq	XP_022860555.1	1e-114	telomere repeat-binding protein 2-like isoform X2
Swissprot	Q6R0E3	3e-98	TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBL	S8CDQ8	0.0	S8CDQ8_9LAMI; Uncharacterized protein
STRING	XP_004153447.1	1e-104	(Cucumis sativus)
STRING	XP_004164871.1	1e-104	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3076	23	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	2e-74	TRF-like 2

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]