PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS62637.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Trihelix

Protein Properties

Length: 331aa MW: 36687.1 Da PI: 9.5943

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS62637.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	63.4	5e-20	39	130	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkr...tsessstcpyfdqle 86 +W+ +e+ aLi+a+r+++ +lrrg+l++++W+evs+ + + ++++qC++k+e+l+kry+++ +++ +r ss++++f++++ EPS62637.1 39 CWSPEETVALIDAYRDKWYSLRRGNLRANHWQEVSEDIasrCPTNPPKTAVQCRHKMEKLRKRYRAEIQRAASRgggVRHFSSSWVHFQKMH 130 7***********************************5333334589**************98888776333588999*****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.1E-21	38	131	No hit	No description
PROSITE profile	PS50090	6.377	40	99	IPR017877	Myb-like domain
SMART	SM00595	1.2E-12	47	137	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MATVISPPSP SNPDDDHLLP TATLALPSVS ASRRLPPPCW SPEETVALID AYRDKWYSLR 60 RGNLRANHWQ EVSEDIASRC PTNPPKTAVQ CRHKMEKLRK RYRAEIQRAA SRGGGVRHFS 120 SSWVHFQKMH TMERGPNPTP PSSSDDDEED DDNNNNDDDG GIKRIHDLYN THNHRAVVSI 180 AQGSASGVRI KIPGRSLPAP HPQKATTFSL DDSGIRNPNF RFNSNSPATG GVNVNGGVSS 240 SKTSSKKKKV GNPGIDDLVA AIQSVGEGYA RIEMAKMEIA KKVEEMRMDL EMKRTKMIVE 300 CQQRILEAFS ESISDGRNTK RARRSSTPPE E

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093230.1	1e-131	trihelix transcription factor ASIL2
TrEMBL	S8DS46	0.0	S8DS46_9LAMI; Uncharacterized protein
STRING	Migut.N01727.1.p	1e-114	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8028	23	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	3e-62	Trihelix family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]