PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS62731.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

bHLH

Protein Properties

Length: 91aa MW: 10721.2 Da PI: 10.7228

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS62731.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.3	1.8e-15	9	58	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++++ Lr+++P++ ++K + a+ L ++++Y++sLq EPS62731.1 9 RSKHSVTEQRRRSKINERYQILRRIIPHS----DQKRDTASFLLEVIHYVQSLQ 58 899***********************9....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.8E-20	6	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-17	6	68	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.085	7	57	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.9E-13	9	58	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.17E-12	9	62	No hit	No description
SMART	SM00353	4.3E-10	13	63	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 91 aa Download sequence Send to blast
GKANANATRS KHSVTEQRRR SKINERYQIL RRIIPHSDQK RDTASFLLEV IHYVQSLQEK 60 VQKYEGGSYQ TWSLEPAKLM PWVKTHWNLA S

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002312362.2	3e-43	transcription factor BIM2 isoform X1
Refseq	XP_011021046.1	3e-43	PREDICTED: transcription factor BIM2-like isoform X1
Refseq	XP_015158971.1	3e-43	PREDICTED: transcription factor BIM2-like isoform X1
Refseq	XP_021674831.1	2e-43	transcription factor BIM2-like isoform X2
Refseq	XP_024462940.1	3e-43	transcription factor BIM2 isoform X1
Swissprot	Q9CAA4	5e-39	BIM2_ARATH; Transcription factor BIM2
TrEMBL	S8CDZ5	4e-61	S8CDZ5_9LAMI; Uncharacterized protein (Fragment)
STRING	POPTR_0008s11120.1	1e-42	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4426	23	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	2e-41	BES1-interacting Myc-like protein 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]