PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS62734.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

G2-like

Protein Properties

Length: 127aa MW: 14978.3 Da PI: 9.3491

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS62734.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.5	2.7e-32	2	56	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWtp+LH+rFve+v+ LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR EPS62734.1 2 KIRIRWTPDLHDRFVECVNWLGGADKATPKQILKLMDTEGLTIFHVKSHLQKYRN 56 569***************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.388	1	59	IPR017930	Myb domain
SuperFamily	SSF46689	3.58E-17	2	56	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-28	2	57	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-24	2	57	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-7	6	55	IPR001005	SANT/Myb domain
Pfam	PF14379	9.6E-19	83	126	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
SKIRIRWTPD LHDRFVECVN WLGGADKATP KQILKLMDTE GLTIFHVKSH LQKYRNAKDV 60 VGSSEGECMH KISHFGIFCN SLQLKEALQL QLDVQRRLHE QLETQRNLQL RIEEQAKQLK 120 MMFDHQR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-25	1	58	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-25	1	58	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-25	2	58	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-25	2	58	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-25	2	58	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-25	2	58	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-25	1	58	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-25	1	58	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-25	1	58	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-25	1	58	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-25	1	58	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-25	1	58	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010653902.1	2e-56	PREDICTED: myb family transcription factor PHL5 isoform X1
Swissprot	Q0WVU3	9e-52	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	S8C7H2	2e-89	S8C7H2_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.J01825.1.p	9e-56	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2491	24	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	4e-54	G2-like family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]