PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS62754.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

MYB_related

Protein Properties

Length: 240aa MW: 27000.1 Da PI: 10.9945

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS62754.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.1	4.8e-09	127	174	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E ++l+d+v ++G g+W++I + + +Rt ++k++w+++l EPS62754.1 127 WTISEVKQLIDGVSEFGVGRWSRIKKLFFpssAHRTSVDLKDKWRNLL 174 9************************999**************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.124	119	178	IPR017930	Myb domain
SuperFamily	SSF46689	2.15E-15	121	176	IPR009057	Homeodomain-like
SMART	SM00717	3.6E-8	123	176	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-12	127	175	IPR009057	Homeodomain-like
Pfam	PF00249	2.5E-7	127	174	IPR001005	SANT/Myb domain
CDD	cd11660	1.25E-20	127	175	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
VTQKRSRKPT QRYIDEFPDP VVRQYKKRRM VSSSTPKDRP ENRKKCASGS RPVKPAPEES 60 SVKAIQVPFG SLFHAECPES PTLFEPNNNN SNNGCTALAL IPAKTDIFLE PDSPEGGNAR 120 RKHHILWTIS EVKQLIDGVS EFGVGRWSRI KKLFFPSSAH RTSVDLKDKW RNLLKASGLT 180 MGKANHKGKG KRSLAWRPLP KSILRRVCEL AAVHPYPKSP KQKLPMIKYI PNASSSPDRS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009795344.1	6e-59	PREDICTED: uncharacterized protein LOC104242064 isoform X2
Refseq	XP_016455873.1	6e-59	PREDICTED: uncharacterized protein LOC107779884 isoform X2
Refseq	XP_016542764.1	8e-59	PREDICTED: uncharacterized protein LOC107843104 isoform X6
TrEMBL	S8C7I9	1e-176	S8C7I9_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_009795343.1	7e-58	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9155	17	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	8e-26	TRF-like 6

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]