PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS62862.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family M-type_MADS
Protein Properties Length: 62aa    MW: 6967.26 Da    PI: 10.8984
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS62862.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.41.6e-17851144
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                k+i++ ++ qvtfskRr  + KKA+E+ + Cd++va++ fs+  
  EPS62862.1  8 KKISDRTKCQVTFSKRRSSLAKKAKEIAICCDVDVALVAFSPAS 51
                68***************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.825160IPR002100Transcription factor, MADS-box
SMARTSM004324.1E-16159IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-14222IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.76E-20360IPR002100Transcription factor, MADS-box
PfamPF003191.4E-18954IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-142237IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-143758IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 62 aa     Download sequence    Send to blast
MGRKIEMKKI SDRTKCQVTF SKRRSSLAKK AKEIAICCDV DVALVAFSPA SRPTIYSKGN  60
RF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009630259.19e-21PREDICTED: agamous-like MADS-box protein AGL104
SwissprotQ9LM461e-15AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLS8DSW19e-37S8DSW1_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.H02389.1.p1e-23(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.12e-11AGAMOUS-like 104
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]