PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS62872.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

MYB_related

Protein Properties

Length: 438aa MW: 46525.1 Da PI: 9.2722

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS62872.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32	2.9e-10	189	236	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqky 47 r +W+teEd +l av+ +G ++W+ I ++ + R++ ++ +rw ++ EPS62872.1 189 RRNWSTEEDAKLTAAVQAHGERNWSHIVKEEFiNDRSPSELSHRWASL 236 679**********************9986667*********776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.04E-11	184	240	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.804	184	241	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-13	186	240	IPR009057	Homeodomain-like
SMART	SM00717	8.1E-10	188	239	IPR001005	SANT/Myb domain
CDD	cd00167	9.77E-10	191	237	No hit	No description
Pfam	PF13921	3.6E-8	192	239	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009737	Biological Process	response to abscisic acid
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MGDKSKARKK GSIGEDVAAA LLRRLYSANT VLALLREISE VAAEKIDWHE LVKNTATGIT 60 SARECQILWR YMAYGETLIE PPGDDSRLAD DDSDTEFEME ASPTPGREAS FEASAYVKVL 120 MTSGHSNDAE VPNNSTIEAP LFINTPNSHG ASFIIPVTLQ KQSVPSGTQG GKRPSNGVPE 180 GDLHLRRKRR NWSTEEDAKL TAAVQAHGER NWSHIVKEEF INDRSPSELS HRWASLKRKQ 240 GDSKAGNSSQ TPEMQLAATN RAMSLALNMP MGEILKVAGQ TNTGNNLSAL FIYSACSWLV 300 SAPQANQQLG KPAAPPKPQP SNAKLPVNNP AATPDSMVKA AAVAAGARIA TLSDASSFME 360 ATRSQNVVHI SSSATGAEGS ATVKKPSGAS IAAGQLPSNV HFIRNGLAKA PIASYSSPAS 420 KPSSTSNPSD AHLPRARS

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MGDKSKARKK GSIGEDVAAA LLRRLYSANT VLALLREISE VAAEKIDWHE LVKNTATGIT  60
SARECQILWR YMAYGETLIE PPGDDSRLAD DDSDTEFEME ASPTPGREAS FEASAYVKVL  120
MTSGHSNDAE VPNNSTIEAP LFINTPNSHG ASFIIPVTLQ KQSVPSGTQG GKRPSNGVPE  180
GDLHLRRKRR NWSTEEDAKL TAAVQAHGER NWSHIVKEEF INDRSPSELS HRWASLKRKQ  240
GDSKAGNSSQ TPEMQLAATN RAMSLALNMP MGEILKVAGQ TNTGNNLSAL FIYSACSWLV  300
SAPQANQQLG KPAAPPKPQP SNAKLPVNNP AATPDSMVKA AAVAAGARIA TLSDASSFME  360
ATRSQNVVHI SSSATGAEGS ATVKKPSGAS IAAGQLPSNV HFIRNGLAKA PIASYSSPAS  420
KPSSTSNPSD AHLPRARS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011082058.1	1e-140	uncharacterized protein LOC105164926
TrEMBL	S8DSW5	0.0	S8DSW5_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.A00432.1.p	1e-123	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3434	22	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	5e-51	MYB_related family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]