PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS62927.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family NAC
Protein Properties Length: 210aa    MW: 23074.1 Da    PI: 9.828
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS62927.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM706.4e-2226865128
         NAM  65 dkkyatgkrknratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  kky+++ r+nr+t sg+Wkatg d++++s+   ++e++glkk+Lv+y g+a kg+kt+W+mhe+rl
  EPS62927.1   2 GKKYKNSIRPNRVTGSGFWKATGIDRPIYSShggGHEVIGLKKSLVYYCGSAGKGVKTEWMMHEFRL 68 
                 589***************************98887888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-26193IPR003441NAC domain
PROSITE profilePS5100530.255193IPR003441NAC domain
PfamPF023651.3E-81168IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
RGKKYKNSIR PNRVTGSGFW KATGIDRPIY SSHGGGHEVI GLKKSLVYYC GSAGKGVKTE  60
WMMHEFRLPN NPADAKSVTL EAEVWTLCRV LKKNASHRKA LSEWKALSSS KNPGSNRVEA  120
SSSETCSIGS SDQVAYPKKG YITFDTWMPE QNKPIATTLL QPPVASWTAA PVGGEIAGDL  180
WKLEDWEDLR SILNSATTTT TAAVINPFYH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-2219982174NAC domain-containing protein 19
3swm_B2e-2219982174NAC domain-containing protein 19
3swm_C2e-2219982174NAC domain-containing protein 19
3swm_D2e-2219982174NAC domain-containing protein 19
3swp_A2e-2219982174NAC domain-containing protein 19
3swp_B2e-2219982174NAC domain-containing protein 19
3swp_C2e-2219982174NAC domain-containing protein 19
3swp_D2e-2219982174NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024968506.13e-58transcription factor JUNGBRUNNEN 1
TrEMBLS8DT021e-154S8DT02_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_009778771.12e-55(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16972469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.12e-44NAC family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]