PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS62935.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family bHLH
Protein Properties Length: 252aa    MW: 27834 Da    PI: 10.1227
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS62935.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.2e-1276118754
                 HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                 ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  EPS62935.1  76 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 118
                 79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.86669118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-1772136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-975118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-1475124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.11E-1376122No hitNo description
Gene3DG3DSA:4.10.280.103.4E-1676130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.72E-5180241No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MGSLNLYPDD NSLIQFPTGF HPFGAGNPPT LFQKRAALRK KKKKKKNKNS SEGDNSDDQL  60
DSKGKSKKGM PAKNLMAERR RRKKLNDRLY MLRSVVPKIS KMDRASILGD AIDYLKELLQ  120
KIDDLSNELE SPAPGSSGAD FYPPACPVPS KIKQELISSP NGQQPTRVEV RLGEGRGVNI  180
QMFCGRRPGL LLSTLRAMDG MGLEVQQAVI SCFNSFVLDV FRAELCGDRR EDLSPEQIKA  240
VLLDSAGFHG AV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-1471122657Transcription factor MYC2
5gnj_B7e-1471122657Transcription factor MYC2
5gnj_E7e-1471122657Transcription factor MYC2
5gnj_F7e-1471122657Transcription factor MYC2
5gnj_G7e-1471122657Transcription factor MYC2
5gnj_I7e-1471122657Transcription factor MYC2
5gnj_M7e-1471122657Transcription factor MYC2
5gnj_N7e-1471122657Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13945KKKKKKK
27784ERRRRKKL
Functional Description ? help Back to Top
Source Description
UniProtMediates stomatal differentiation in the epidermis probably by controlling successive roles of SPCH, MUTE, and FAMA (PubMed:18641265). Functions as a dimer with SPCH during stomatal initiation (PubMed:18641265, PubMed:28507175). {ECO:0000269|PubMed:18641265, ECO:0000269|PubMed:28507175}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889974.11e-89transcription factor SCREAM2
RefseqXP_011073188.13e-89transcription factor ICE1
RefseqXP_013461649.12e-89transcription factor ICE1 isoform X1
SwissprotQ9LPW31e-86SCRM2_ARATH; Transcription factor SCREAM2
TrEMBLS8C8470.0S8C847_9LAMI; Uncharacterized protein
STRINGAl_scaffold_0001_13264e-89(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7892497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.16e-87bHLH family protein
Publications ? help Back to Top
  1. Tarasov VA,Khadeeva NV,Mel'nik VA,Ezhova TA,Shestakov SV
    The Atlg12860 gene of Arabidopsis thaliana determines cathelicidin-like antimicrobial activity.
    Dokl. Biol. Sci., 2009.
    [PMID:19760875]
  2. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  3. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Emmerstorfer A, et al.
    Over-expression of ICE2 stabilizes cytochrome P450 reductase in Saccharomyces cerevisiae and Pichia pastoris.
    Biotechnol J, 2015. 10(4): p. 623-35
    [PMID:25641738]
  6. Lee HG,Seo PJ
    The MYB96-HHP module integrates cold and abscisic acid signaling to activate the CBF-COR pathway in Arabidopsis.
    Plant J., 2015. 82(6): p. 962-77
    [PMID:25912720]
  7. Raissig MT,Abrash E,Bettadapur A,Vogel JP,Bergmann DC
    Grasses use an alternatively wired bHLH transcription factor network to establish stomatal identity.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(29): p. 8326-31
    [PMID:27382177]
  8. Fu ZW,Wang YL,Lu YT,Yuan TT
    Nitric oxide is involved in stomatal development by modulating the expression of stomatal regulator genes in Arabidopsis.
    Plant Sci., 2016. 252: p. 282-289
    [PMID:27717464]
  9. de Marcos A, et al.
    A Mutation in the bHLH Domain of the SPCH Transcription Factor Uncovers a BR-Dependent Mechanism for Stomatal Development.
    Plant Physiol., 2017. 174(2): p. 823-842
    [PMID:28507175]