PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS63036.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family HSF
Protein Properties Length: 260aa    MW: 30122.6 Da    PI: 5.8301
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS63036.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.62.3e-34141052102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k+ye+++d+++++++sws +++sfvv+d+ +f++++Lpk+Fkhsnf+SF+RQLn+YgF+kv+ e+         weF+++ F +g+  ll++i+
    EPS63036.1  14 FIAKTYEMVDDPSTDSIVSWSLSNTSFVVWDTPRFSRDLLPKFFKHSNFSSFIRQLNTYGFRKVDPEQ---------WEFANDDFIRGQPLLLKNIH 101
                   9********************888****************************************9998.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    EPS63036.1 102 RRKP 105
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.86E-349103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-6110103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.3E-3710103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-3014103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDEAPSSSNS LPPFIAKTYE MVDDPSTDSI VSWSLSNTSF VVWDTPRFSR DLLPKFFKHS  60
NFSSFIRQLN TYGFRKVDPE QWEFANDDFI RGQPLLLKNI HRRKPVHSHS TANPSSSSHL  120
LTENERKRYE DEIQRLAHDK DSLHAELQTK KREQEELTVT MGTLMDRVQN VENNHANMLS  180
CLAQTLRRPA VDFVSLSDVN YRKRRFPGNG FLSEEQQHCT EDNTASLVEK LDANSLVIFN  240
RELLDQLESS LIFWEKVVSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-25110316129Heat shock factor protein 1
5d5v_B3e-25110316129Heat shock factor protein 1
5d5v_D3e-25110316129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101446.11e-110heat stress transcription factor A-4a
RefseqXP_011101447.11e-110heat stress transcription factor A-4a
SwissprotO494035e-75HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLS8CEU50.0S8CEU5_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.M00999.1.p1e-107(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34482344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.13e-72heat shock transcription factor A4A
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]