PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS63096.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ERF
Protein Properties Length: 136aa    MW: 14882.8 Da    PI: 10.3938
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS63096.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.4e-172170255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a   l+g
  EPS63096.1 21 QYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDIAVYHLRG 70
                69*****99.**********9...336**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.59E-262079No hitNo description
PROSITE profilePS5103222.4312178IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-212179IPR016177DNA-binding domain
SMARTSM003804.9E-352184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-302179IPR001471AP2/ERF domain
PRINTSPR003674.9E-122233IPR001471AP2/ERF domain
PfamPF008472.6E-102270IPR001471AP2/ERF domain
PRINTSPR003674.9E-126080IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MSAGGGGDGG GGRRMRNQKQ QYRGIRMRKW GKWVAEIREP NKRSRIWLGS YSTPVAAARA  60
YDIAVYHLRG PTAKLNFPEE ISGGVSNLKD LSAASIRERA VEVGARVDAL LTAAAVAAHN  120
HEIDLNKKPE PEFDDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-171184478Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012840786.13e-53PREDICTED: ethylene-responsive transcription factor RAP2-10-like
SwissprotQ9FH947e-45ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLS8CF012e-94S8CF01_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.L00172.1.p1e-52(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.14e-42DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]