PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS63200.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

LBD

Protein Properties

Length: 242aa MW: 27173.8 Da PI: 7.0822

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS63200.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.5	4.2e-42	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk lrrkC+++Cv+apyfp ++p+kf nvhk+FGasnv k+l++l+ +reda++sl+yeAe r+rdPvyG+vg+i+ lq++l+q++ +l+++k+ EPS63200.1 7 PCAACKCLRRKCTHECVFAPYFPPDNPQKFTNVHKVFGASNVAKILNELSAAQREDAVNSLAYEAEYRLRDPVYGCVGLISILQHRLKQVQIDLETAKK 105 7**********************************************************************************************9998 PP DUF260 100 e 100 e EPS63200.1 106 E 106 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.181	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.5E-42	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MSSSNSPCAA CKCLRRKCTH ECVFAPYFPP DNPQKFTNVH KVFGASNVAK ILNELSAAQR 60 EDAVNSLAYE AEYRLRDPVY GCVGLISILQ HRLKQVQIDL ETAKKELVSY VGPSAMLPIL 120 SHPTSQPSAP YMASAYQMMG YHHQQQQQQQ LQHQPMMGVL HNGPQMVIGE PQVHQQQHQQ 180 PHFFEAQQMM RCYELQQQQQ AQTQNDLARF NSDFEDVAAM VNLDITGGGR YNQIPTAAAA 240 VT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-48	3	121	7	130	LOB family transfactor Ramosa2.1
5ly0_B	6e-48	3	121	7	130	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020554582.1	2e-90	LOB domain-containing protein 36
Swissprot	Q9FKZ3	5e-72	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	S8C8P8	1e-180	S8C8P8_9LAMI; Uncharacterized protein (Fragment)
STRING	cassava4.1_027088m	2e-77	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	2e-70	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]