PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS63277.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family M-type_MADS
Protein Properties Length: 137aa    MW: 15637.6 Da    PI: 9.2369
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS63277.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.11.1e-181764249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                ri+n+   + tfskRr g+ KKA+ELS+LC+++v v+ifs+t+  y +
  EPS63277.1 17 RISNQDDLYATFSKRRLGLYKKASELSTLCGVDVGVVIFSPTDVPYSF 64
                89***************************************9876665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.189868IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-24867IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.12E-23983IPR002100Transcription factor, MADS-box
CDDcd001203.95E-27967No hitNo description
PRINTSPR004042.5E-151030IPR002100Transcription factor, MADS-box
PfamPF003191.4E-211764IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-153045IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-154566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MSGGRQSRGR QKIPIRRISN QDDLYATFSK RRLGLYKKAS ELSTLCGVDV GVVIFSPTDV  60
PYSFFSPTME SVLRRNNNNN SAAAVDEYAR LVEARARARI EECNARLDGM TEEREALKRR  120
DKAADEEMER CRDGGWW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012855809.12e-55PREDICTED: myocyte-specific enhancer factor 2A-like
TrEMBLS8DTY44e-96S8DTY4_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.A00408.1.p3e-54(Erythranthe guttata)
STRINGMigut.K00930.1.p2e-54(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-23AGAMOUS-like 61
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]