PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS63334.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

ERF

Protein Properties

Length: 217aa MW: 24268.4 Da PI: 8.8744

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS63334.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.9	1.2e-18	94	144	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+++AeIrdp + k r++lg+f+ aeeAa+ +++a+ +l+g EPS63334.1 94 HFRGVRRRP-WGKFAAEIRDP---NrKGIRVWLGTFDKAEEAARSYDRAAFRLRG 144 69*****.******9...6566***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.05E-30	93	152	No hit	No description
SMART	SM00380	1.7E-37	94	158	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.157	94	152	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.5E-31	94	153	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.7E-22	94	154	IPR016177	DNA-binding domain
Pfam	PF00847	8.0E-13	94	144	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.7E-12	95	106	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.7E-12	134	154	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
SALEMIRHHL LVDDSSSAFM PADCFSLSAE SSNSSSTNSS VSIMDFSSNH LLEFETKPKF 60 QVEENKPKRK KPCCLHVAIP KTATKKGADA EFQHFRGVRR RPWGKFAAEI RDPNRKGIRV 120 WLGTFDKAEE AARSYDRAAF RLRGSKAILN FPLEIGNSDA PQEDAGRKRE TAMKKVFKTE 180 DGSSSEEVPL PLTPSIWTDI WDGSNVRGIF EIPPLSP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	1e-29	90	159	1	70	ATERF1
3gcc_A	1e-29	90	159	1	70	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269\|PubMed:10652129, ECO:0000269\|PubMed:10792818, ECO:0000269\|PubMed:7756828, ECO:0000269\|Ref.2}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00556	DAP	Transfer from AT5G51190	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and in leaves. Also strongly induced by cycloheximide, mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269\|PubMed:10652129, ECO:0000269\|PubMed:12090623, ECO:0000269\|PubMed:7756828, ECO:0000269\|Ref.2}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011101098.1	2e-56	ethylene-responsive transcription factor 5
Swissprot	Q40478	1e-53	ERF5_TOBAC; Ethylene-responsive transcription factor 5
TrEMBL	S8C8Y1	1e-158	S8C8Y1_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_009776184.1	2e-52	(Nicotiana sylvestris)
STRING	PGSC0003DMT400090475	7e-53	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA963	23	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51190.1	1e-47	ERF family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]