PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS63418.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C3H
Protein Properties Length: 367aa    MW: 39995.3 Da    PI: 7.4026
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS63418.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH331e-10106130126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 ykt+lC+ f++ GtC+y  +C+FaH+
  EPS63418.1 106 YKTKLCCKFRA-GTCPYVTNCNFAHS 130
                 9**********.*************8 PP
2zf-CCCH19.51.7e-06182202626
                 -SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                 C+ f+    C+yGd+C+F+H+
  EPS63418.1 182 CKKFYTEEGCPYGDSCTFMHD 202
                 99999999************7 PP
3zf-CCCH42.21.3e-13240265126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt++C+ +  tG+C++G++C+FaHg
  EPS63418.1 240 WKTRICNKWELTGYCPFGSKCHFAHG 265
                 8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.09E-8102136IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-15103138IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-4105131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.263105132IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-8106130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.474176204IPR000571Zinc finger, CCCH-type
SMARTSM003561.4176203IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-6176204IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-7178204IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-17234270IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-10235270IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-9239266IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422239267IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-11240265IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDYRQDNGFS VGNVVQIIGG NGNSTNVSQE NWGPMPTNQA VWATEEDYSM WSGESSVINN  60
PSTPLYDGKI SQSLSGTEPP YKRTRNSVST DLISSNRAKA IGKMFYKTKL CCKFRAGTCP  120
YVTNCNFAHS VEELRKPPPN WQEIVAAHDE ERVVSSEPRE EFQIPILGVT DEIQRSHKGR  180
HCKKFYTEEG CPYGDSCTFM HDEQSRTRET VAISLGPGPG AGNGYVASGN GSTLIKPSNW  240
KTRICNKWEL TGYCPFGSKC HFAHGAAELN RFGGGPLESE NRDSSNADGN KQGSAAASKN  300
TVESAVAAGN NLPPSAPPPL SDSGCYHIGG APQRPSNTIQ RSGFRPAQKW KGPDKISKIY  360
GDWIDDL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092357.11e-175zinc finger CCCH domain-containing protein 12 isoform X2
SwissprotQ9LQM31e-114C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLS8DKR40.0S8DKR4_9LAMI; Uncharacterized protein
STRINGMigut.N01445.1.p1e-161(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37292343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-104C3H family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]