PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS63477.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Nin-like

Protein Properties

Length: 469aa MW: 52529.8 Da PI: 8.6967

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS63477.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93	2.1e-29	403	453	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAA++Lgvc+T+LKriCRq+GI+RWP+Rki+++ EPS63477.1 403 EKHVSLSVLQQYFSGSLKDAARSLGVCPTTLKRICRQHGIARWPSRKINKV 453 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.768	387	469	IPR003035	RWP-RK domain
Pfam	PF02042	1.0E-26	406	453	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence Send to blast
NDGDVINGSI IPRHPKTSLS EKMLTALHLF KENTGGSLLL QVWVPIKNGD QYVLSTSDQP 60 YLLDQTLSGY REVSRSFTFS VESRPGGFLG LPGRVFTSKF PEWTSNLMYY TESEYLRVQY 120 AADHKVRGSI ALPVFDLNSP DSSCCAVLEL VTMKEKSNFD SEIENLCRVL QAVNLRSRAP 180 PRLLPQSLSN SQRVALSEIS DVLRAVCHAH RLPLALTWIP CSLKEDSGDG VIELRPKRWS 240 GVGKLCVEDT ACYVYDKTMK GFVHACSEHY LEAGQGVVGK ALQSNRPFFY PDLKEYHINE 300 YPLVHHARKF GLNAAVAIRL RSTHTGSDDY VLEFFLPSDA TGSAEQQHLL NNISGTMQRI 360 CRSLRTVSDD ELLLMDVSQL NTNPPYQQVG PEKQSEKKRN TGEKHVSLSV LQQYFSGSLK 420 DAARSLGVCP TTLKRICRQH GIARWPSRKI NKVNRSLRKL QSVLDSVQG

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence Send to blast

NDGDVINGSI IPRHPKTSLS EKMLTALHLF KENTGGSLLL QVWVPIKNGD QYVLSTSDQP  60
YLLDQTLSGY REVSRSFTFS VESRPGGFLG LPGRVFTSKF PEWTSNLMYY TESEYLRVQY  120
AADHKVRGSI ALPVFDLNSP DSSCCAVLEL VTMKEKSNFD SEIENLCRVL QAVNLRSRAP  180
PRLLPQSLSN SQRVALSEIS DVLRAVCHAH RLPLALTWIP CSLKEDSGDG VIELRPKRWS  240
GVGKLCVEDT ACYVYDKTMK GFVHACSEHY LEAGQGVVGK ALQSNRPFFY PDLKEYHINE  300
YPLVHHARKF GLNAAVAIRL RSTHTGSDDY VLEFFLPSDA TGSAEQQHLL NNISGTMQRI  360
CRSLRTVSDD ELLLMDVSQL NTNPPYQQVG PEKQSEKKRN TGEKHVSLSV LQQYFSGSLK  420
DAARSLGVCP TTLKRICRQH GIARWPSRKI NKVNRSLRKL QSVLDSVQG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073897.1	0.0	protein NLP9
Swissprot	Q9M1B0	0.0	NLP9_ARATH; Protein NLP9
TrEMBL	S8DUB8	0.0	S8DUB8_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.N03106.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3981	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]