PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS63497.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

ZF-HD

Protein Properties

Length: 210aa MW: 23300 Da PI: 9.6546

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS63497.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	99	3.5e-31	38	94	3	60
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +rY+eClkNhAas+G+h+vDGC+Efmps g egta lkCaAC+CHRnFHR+eve e EPS63497.1 38 VARYRECLKNHAASMGAHVVDGCCEFMPS-GGEGTAGELKCAACDCHRNFHRKEVEGE 94 579***********************9.8899******************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	5.7E-29	39	91	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	7.3E-27	40	91	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	8.0E-20	40	94	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.257	41	90	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.59E-18	141	207	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-28	142	208	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.2E-24	150	206	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
GGVGNPPPPP PPPAAAAVAV PRGSSSSNHP NAAAGSPVAR YRECLKNHAA SMGAHVVDGC 60 CEFMPSGGEG TAGELKCAAC DCHRNFHRKE VEGENPRPSA SYRPPFLGHH HHHQRHQHRP 120 ARPHNSGAAE SSSEDLHMFE SGHADNPSSK KRFRTKFSQE QKDQMQEFAE KLGWRMQKQD 180 EHQVQQFCER SGVKKQVFKV WMHNNKRLKK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	6e-22	149	206	16	73	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269\|PubMed:16428600, ECO:0000269\|PubMed:21059647, ECO:0000269\|PubMed:21779177}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269\|PubMed:21779177}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012469414.1	2e-67	PREDICTED: zinc-finger homeodomain protein 6-like
Refseq	XP_021907866.1	2e-66	zinc-finger homeodomain protein 6-like, partial
Refseq	XP_022740152.1	3e-66	zinc-finger homeodomain protein 6-like
Swissprot	Q9FRL5	8e-54	ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBL	S8DUD2	1e-153	S8DUD2_9LAMI; Uncharacterized protein (Fragment)
STRING	evm.model.supercontig_6.121	1e-66	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA518	24	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	3e-53	homeobox protein 22

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]