PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS63500.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family NAC
Protein Properties Length: 185aa    MW: 21046.3 Da    PI: 10.3006
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS63500.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.43.9e-55111361128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lppGfrFhPtdeel+++yL +k+ +  +++  ++ +vd++kvePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat +gyWkatgkdke+l+ +g l
  EPS63500.1  11 LPPGFRFHPTDEELITHYLSPKIINAGFTT-GIMGDVDLNKVEPWDLPWKAKMGEKEWYFFCIRDRKYPTGLRTNRATGAGYWKATGKDKEILR-GGIL 107
                 79*************************999.89***************888999***************************************9.**** PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                 vg+kktLvfykgrapkgekt+W+mheyr 
  EPS63500.1 108 VGMKKTLVFYKGRAPKGEKTNWIMHEYRQ 136
                 ***************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.28E-647159IPR003441NAC domain
PROSITE profilePS5100558.37811159IPR003441NAC domain
PfamPF023653.1E-2912135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
GMAGGDDQFS LPPGFRFHPT DEELITHYLS PKIINAGFTT GIMGDVDLNK VEPWDLPWKA  60
KMGEKEWYFF CIRDRKYPTG LRTNRATGAG YWKATGKDKE ILRGGILVGM KKTLVFYKGR  120
APKGEKTNWI MHEYRQETKN DLFKAANKND WVISRVFKKS PGGKKVHISG LIKNQRTGDI  180
PPLID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-58816514171NO APICAL MERISTEM PROTEIN
1ut4_B7e-58816514171NO APICAL MERISTEM PROTEIN
1ut7_A7e-58816514171NO APICAL MERISTEM PROTEIN
1ut7_B7e-58816514171NO APICAL MERISTEM PROTEIN
3swm_A9e-58816517174NAC domain-containing protein 19
3swm_B9e-58816517174NAC domain-containing protein 19
3swm_C9e-58816517174NAC domain-containing protein 19
3swm_D9e-58816517174NAC domain-containing protein 19
3swp_A9e-58816517174NAC domain-containing protein 19
3swp_B9e-58816517174NAC domain-containing protein 19
3swp_C9e-58816517174NAC domain-containing protein 19
3swp_D9e-58816517174NAC domain-containing protein 19
4dul_A7e-58816514171NAC domain-containing protein 19
4dul_B7e-58816514171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00496DAPTransfer from AT5G07680Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
UniProtINDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009761662.13e-97PREDICTED: NAC domain-containing protein 100-like
RefseqXP_016437736.13e-97PREDICTED: NAC domain-containing protein 92-like
SwissprotQ9FLJ29e-89NC100_ARATH; NAC domain-containing protein 100
SwissprotQ9FLR39e-89NAC79_ARATH; NAC domain-containing protein 79
TrEMBLS8C9M31e-134S8C9M3_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_009761662.11e-96(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.14e-91NAC domain containing protein 80
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Vidal EA,Álvarez JM,Gutiérrez RA
    Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function.
    Plant Signal Behav, 2014. 9(3): p. e28501
    [PMID:24642706]
  5. Lee MH,Jeon HS,Kim HG,Park OK
    An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
    New Phytol., 2017. 214(1): p. 343-360
    [PMID:28032643]